• Esp3I (BsmBI)

Esp3I (BsmBI, Type IIS Restriction Enzyme)

REF: EG21503S

Recognition & Cleavage

Recognition site: 5′-CGTCTC-3′ (non-palindromic)

Cleavage pattern (offset):

5′ ... C G T C T C (N1) ... 3′
3′ ... G C A G A G (N5) ... 5′
      

Type: IIS (cuts outside the site) · Common use: Golden Gate assembly

Isoschizomer: BsmBI (methylation sensitivities can differ)

Recommended Reaction

  • Buffer: 1× CutOne® or 1× CutOne® Color Buffer
  • Incubation: 37 °C
  • Typical duration: 15 min (plasmid); 15–30 min (PCR); 30–60 min (genomic DNA)

Color Buffer includes density reagent plus red/yellow tracking dyes for direct gel loading.

Quick Protocol (Fast DNA Digestion)

  1. 20 µl (plasmid): 15 µl ddH₂O, 2 µl 10× buffer, ≤1 µg DNA, 1 µl Esp3I.
  2. 30 µl (PCR product): 16 µl ddH₂O, 3 µl 10× buffer, ~0.2 µg DNA, 1 µl Esp3I.
    If PCR is unpurified, use 2 µl 10× buffer.
  3. 50 µl (genomic): 30 µl ddH₂O, 5 µl 10× buffer, 10 µl DNA (5 µg), 5 µl Esp3I.
  4. Mix gently, quick-spin; incubate at 37 °C for the indicated time.
  5. (Optional) Heat-inactivate at 80 °C for 20 min or load gel directly (Color Buffer).

Double / Multiple Digests

  • Use ~1 µl of each enzyme; total enzyme volume ≤10% of reaction.
  • If temperatures differ, start at the lower temperature, then add the second enzyme and shift higher.
  • Increase incubation time if total volume >20 µl.

Quality Control

  • Functional test: 1 µg λDNA + 1 µl Esp3I in 20 µl CutOne® → complete digest in 15 min at 37 °C.
  • Prolonged incubation / star activity: 3 h at 37 °C shows no nuclease degradation; longer incubation may cause star activity.
  • Ligation & recutting: After 10× over-digest, >95% ligation at 22 °C; >95% of ligated fragments recut by Esp3I.

Methylation Effects

Methylase Effect
Dam No effect
Dcm No effect
CpG Impaired
EcoKI No effect
EcoBI No effect

Recognition Sites in Common DNAs

DNA # Sites DNA # Sites
λDNA 14 ΦX174 0
pBR322 1 pUC57 2
pUC18/19 2 SV40 0
M13mp18/19 1 Adeno2 21

Activity in Different Buffers

Buffer Activity
CutOne® 100%
Thermo FastDigest 100%
NEB rCutSmart™ 100%
Takara QuickCut™ 100%

*Activities refer to the functional test conditions.

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Esp3I (BsmBI)

  • Brand: Best Enzymes
  • Product CAT#: EG21503S
  • Availability: In Stock

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Tags: Restriction Enzyme